Basic Statistics
Measure | Value |
---|---|
Filename | AdapterDimer_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37969586 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC | 6814801 | 17.948051896062285 | TruSeq Adapter, Index 11 (100% over 50bp) |
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC | 441478 | 1.162714810743525 | TruSeq Adapter, Index 11 (100% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAGCTCGTATGC | 96949 | 0.2553333080850552 | TruSeq Adapter, Index 11 (98% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACACCTCGTATGC | 95426 | 0.25132220298635866 | TruSeq Adapter, Index 11 (98% over 50bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAACTCGTATGC | 64373 | 0.1695383247001956 | TruSeq Adapter, Index 11 (98% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCACA | 1760555 | 0.0 | 62.98552 | 9 |
AGAGCAC | 1823480 | 0.0 | 60.95374 | 8 |
AAGAGCA | 1903860 | 0.0 | 58.485428 | 7 |
GAAGAGC | 1954130 | 0.0 | 56.914265 | 6 |
GGAAGAG | 2022465 | 0.0 | 54.981632 | 5 |
CGGAAGA | 2078735 | 0.0 | 53.561546 | 4 |
TCGGAAG | 2118155 | 0.0 | 52.62653 | 3 |
ATCGGAA | 2165755 | 0.0 | 51.55099 | 2 |
GATCGGA | 2171675 | 0.0 | 51.253292 | 1 |
GCTTGAA | 846785 | 0.0 | 24.2986 | 55-59 |
CTGCTTG | 934800 | 0.0 | 23.899994 | 55-59 |
TGAAAAA | 859980 | 0.0 | 23.786932 | 60-64 |
TCTTCTG | 941975 | 0.0 | 23.729296 | 50-54 |
TGCTTGA | 871810 | 0.0 | 23.701048 | 55-59 |
TCTGCTT | 940170 | 0.0 | 23.652592 | 55-59 |
GCCGTCT | 951325 | 0.0 | 23.63251 | 45-49 |
TGCCGTC | 957445 | 0.0 | 23.62207 | 45-49 |
ATGCCGT | 993990 | 0.0 | 23.582218 | 45-49 |
CTTCTGC | 953720 | 0.0 | 23.536114 | 50-54 |
GTCTTCT | 952815 | 0.0 | 23.386187 | 50-54 |